Transcript: Mouse XM_017319177.1

PREDICTED: Mus musculus predicted gene 14391 (Gm14391), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm14391 (665001)
Length:
9831
CDS:
8069..8632

Additional Resources:

NCBI RefSeq record:
XM_017319177.1
NBCI Gene record:
Gm14391 (665001)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319177.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148901 CAAGGGAGAAACCCTATGAAT pLKO.1 9115 3UTR 100% 5.625 3.375 N ZNF658B n/a
2 TRCN0000217699 GAGCAACCCTCTGAGTTTATT pLKO.1 8282 CDS 100% 15.000 7.500 Y Gm14296 n/a
3 TRCN0000231380 GAGCAACCCTCTGAGTTTATT pLKO_005 8282 CDS 100% 15.000 7.500 Y 0610010B08Rik n/a
4 TRCN0000256976 GTAGTCAAAGGCATCAAATTA pLKO_005 8334 CDS 100% 15.000 7.500 Y Gm14393 n/a
5 TRCN0000239826 AGAAGGAGTGACCTCCAAATA pLKO_005 8408 CDS 100% 13.200 6.600 Y Gm14393 n/a
6 TRCN0000245314 AGAGCAACCCTCTGAGTTTAT pLKO_005 8281 CDS 100% 13.200 6.600 Y Gm14325 n/a
7 TRCN0000226091 AGCAACCCTCTGAGTTTATTC pLKO_005 8283 CDS 100% 13.200 6.600 Y Gm2004 n/a
8 TRCN0000242349 GAGTGACCTCCAAATACATAA pLKO_005 8413 CDS 100% 13.200 6.600 Y Gm14393 n/a
9 TRCN0000200786 GCACATATAGTTGAGAGAAAT pLKO.1 8935 3UTR 100% 13.200 6.600 Y Gm14296 n/a
10 TRCN0000272213 GGCATCAAATTAAACATAATG pLKO_005 8343 CDS 100% 13.200 6.600 Y Gm14308 n/a
11 TRCN0000231379 TCACAGCTATAGGTTACATTT pLKO_005 8187 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
12 TRCN0000234269 TCACAGCTATAGGTTACATTT pLKO_005 8187 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
13 TRCN0000239827 TTGTAGTCAAAGGCATCAAAT pLKO_005 8332 CDS 100% 13.200 6.600 Y Gm14393 n/a
14 TRCN0000242348 ACATACAATTGAAGACCATTT pLKO_005 8215 CDS 100% 10.800 5.400 Y Gm14393 n/a
15 TRCN0000239828 ACTGTAACCAATGTGGTAAAG pLKO_005 8379 CDS 100% 10.800 5.400 Y Gm14393 n/a
16 TRCN0000239829 AGGAGAGAAACCCTATGAATG pLKO_005 8446 CDS 100% 10.800 5.400 Y Gm14393 n/a
17 TRCN0000243733 ATAGGAATCTCACAGCTATAG pLKO_005 8178 CDS 100% 10.800 5.400 Y Gm14322 n/a
18 TRCN0000239453 CATACAATTGAAGACCATTTC pLKO_005 8216 CDS 100% 10.800 5.400 Y Gm14288 n/a
19 TRCN0000239455 CTCAGAAGAGTCTCTACAAAG pLKO_005 8139 CDS 100% 10.800 5.400 Y Gm14288 n/a
20 TRCN0000243739 GAATGTAAACAATGTGGTAAA pLKO_005 8546 CDS 100% 10.800 5.400 Y Gm14411 n/a
21 TRCN0000242409 GAATGTAACCAATGTGGTAAA pLKO_005 8713 3UTR 100% 10.800 5.400 Y Gm14418 n/a
22 TRCN0000242350 GACTGTAACCAATGTGGTAAA pLKO_005 8378 CDS 100% 10.800 5.400 Y Gm14393 n/a
23 TRCN0000242347 GAGTTTATTCAATGTGGTAAA pLKO_005 8294 CDS 100% 10.800 5.400 Y Gm14393 n/a
24 TRCN0000239782 TGTGATGCTAGAGACCTATAG pLKO_005 8161 CDS 100% 10.800 5.400 Y Gm6710 n/a
25 TRCN0000190377 CGAACACATACAGGAGAGAAA pLKO.1 8435 CDS 100% 4.950 2.475 Y Gm14296 n/a
26 TRCN0000242406 GAGTCTCTACAAAGGTGTGAT pLKO_005 8146 CDS 100% 4.950 2.475 Y Gm14418 n/a
27 TRCN0000202246 GCGAACACATACAGGAGAGAA pLKO.1 8434 CDS 100% 4.950 2.475 Y Gm14296 n/a
28 TRCN0000243742 CACCTATGATGACGTGCATGT pLKO_005 8080 CDS 100% 4.050 2.025 Y Gm14411 n/a
29 TRCN0000235325 GTGATGCTAGAGACCTATAAG pLKO_005 8162 CDS 100% 13.200 6.600 Y OTTMUSG00000016228 n/a
30 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 8443 CDS 100% 13.200 6.600 Y Gm14305 n/a
31 TRCN0000231378 TGTGATGCTAGAGACCTATAA pLKO_005 8161 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
32 TRCN0000284677 ACAATGTGGTAAAGCCTTTAC pLKO_005 8554 CDS 100% 10.800 5.400 Y Gm14410 n/a
33 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 8442 CDS 100% 10.800 5.400 Y Gm14308 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319177.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.