Transcript: Mouse XM_017319439.1

PREDICTED: Mus musculus ATP-binding cassette, sub-family A (ABC1), member 4 (Abca4), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Abca4 (11304)
Length:
7603
CDS:
614..7366

Additional Resources:

NCBI RefSeq record:
XM_017319439.1
NBCI Gene record:
Abca4 (11304)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319439.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000440757 CCGGAGTACCCATGCATTAAT pLKO_005 4781 CDS 100% 15.000 21.000 N Abca4 n/a
2 TRCN0000436638 GGCGGATCCTGTCGAAGATTT pLKO_005 2215 CDS 100% 13.200 18.480 N Abca4 n/a
3 TRCN0000435276 GACGACTTGCTTCCCGATTTG pLKO_005 6956 CDS 100% 10.800 15.120 N Abca4 n/a
4 TRCN0000113473 CCCGCCTATTCTTACGACAAA pLKO.1 1505 CDS 100% 4.950 6.930 N Abca4 n/a
5 TRCN0000113472 CGTCTGAACATCACTTTCTAT pLKO.1 3275 CDS 100% 5.625 4.500 N Abca4 n/a
6 TRCN0000421261 CAACTTCCTCTGGGATATTAT pLKO_005 5608 CDS 100% 15.000 10.500 N Abca4 n/a
7 TRCN0000113471 CCTGGATGTATGGGCATCAAT pLKO.1 4650 CDS 100% 5.625 3.938 N Abca4 n/a
8 TRCN0000113470 CTCTTTCAGAAAGAAACCAAA pLKO.1 7378 3UTR 100% 4.950 3.465 N Abca4 n/a
9 TRCN0000113474 GCTGATGATATGACCAGCTTT pLKO.1 1904 CDS 100% 4.950 3.465 N Abca4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319439.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.