Transcript: Mouse XM_017320004.1

PREDICTED: Mus musculus low density lipoprotein receptor-related protein 8, apolipoprotein e receptor (Lrp8), transcript variant X15, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lrp8 (16975)
Length:
7544
CDS:
202..3015

Additional Resources:

NCBI RefSeq record:
XM_017320004.1
NBCI Gene record:
Lrp8 (16975)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017320004.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000178706 CGAGTGGCATTAAGTCTTGAA pLKO.1 2977 CDS 100% 4.950 6.930 N Lrp8 n/a
2 TRCN0000177833 CAGCCAAATCTGCGTGAATTA pLKO.1 1458 CDS 100% 13.200 9.240 N Lrp8 n/a
3 TRCN0000176636 CCCACATGACATTGTAATCTT pLKO.1 2313 CDS 100% 5.625 3.938 N Lrp8 n/a
4 TRCN0000177656 CCAACTATCCAGCATTGACTT pLKO.1 2118 CDS 100% 4.950 3.465 N Lrp8 n/a
5 TRCN0000176508 CAAGAGCATGAATTTCGACAA pLKO.1 2868 CDS 100% 4.050 2.835 N Lrp8 n/a
6 TRCN0000200088 CAATGGAATCACCCTGGACTT pLKO.1 2058 CDS 100% 4.050 2.835 N Lrp8 n/a
7 TRCN0000200087 CCCATCTCTGATCTTCACGAA pLKO.1 1563 CDS 100% 2.640 1.848 N Lrp8 n/a
8 TRCN0000198468 GAGGAAGATGAGCTTCACATA pLKO.1 2920 CDS 100% 4.950 2.970 N Lrp8 n/a
9 TRCN0000177978 GAGAACCTCAATAACCCACAT pLKO.1 2299 CDS 100% 4.050 2.430 N Lrp8 n/a
10 TRCN0000152515 GAAGAGGAAGAGGAAGATGAT pLKO.1 2911 CDS 100% 4.950 2.475 Y NPM2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017320004.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.