Transcript: Mouse XM_017321181.1

PREDICTED: Mus musculus acyl-Coenzyme A oxidase 3, pristanoyl (Acox3), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Acox3 (80911)
Length:
4046
CDS:
277..2379

Additional Resources:

NCBI RefSeq record:
XM_017321181.1
NBCI Gene record:
Acox3 (80911)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017321181.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427561 ACCATCAGAATGATGTAATTT pLKO_005 2794 3UTR 100% 15.000 21.000 N Acox3 n/a
2 TRCN0000420819 GCTGATGGTGAGCTCTATAAA pLKO_005 2248 CDS 100% 15.000 21.000 N Acox3 n/a
3 TRCN0000076776 CCACTTCTCTAAGACAATCTT pLKO.1 1377 CDS 100% 5.625 7.875 N Acox3 n/a
4 TRCN0000076773 CCACCTATTTATCTGACCATA pLKO.1 3396 3UTR 100% 4.950 6.930 N Acox3 n/a
5 TRCN0000076777 CGGAGATACTGCCAAGAGAAA pLKO.1 1867 CDS 100% 4.950 3.960 N Acox3 n/a
6 TRCN0000222673 CCGAGTTCTCTGCCAACAAAT pLKO.1 2327 CDS 100% 13.200 9.240 N Acox3 n/a
7 TRCN0000436875 TGCGAACGACAGCTCACTATG pLKO_005 785 CDS 100% 10.800 7.560 N Acox3 n/a
8 TRCN0000076774 CCAGGATGTAATCCACTTCAA pLKO.1 399 CDS 100% 4.950 3.465 N Acox3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017321181.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.