Transcript: Mouse XM_017321680.1

PREDICTED: Mus musculus coatomer protein complex, subunit gamma 2 (Copg2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Copg2 (54160)
Length:
3375
CDS:
203..2929

Additional Resources:

NCBI RefSeq record:
XM_017321680.1
NBCI Gene record:
Copg2 (54160)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017321680.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000312898 TGAGAGCTGCTTGCGAAATAA pLKO_005 1078 CDS 100% 15.000 21.000 N Copg2 n/a
2 TRCN0000312897 TCCGGGATTGTGACCCTAATA pLKO_005 2499 CDS 100% 13.200 18.480 N Copg2 n/a
3 TRCN0000100685 GCATGAGCTTTAGAGTTTCTT pLKO.1 3106 3UTR 100% 5.625 7.875 N Copg2 n/a
4 TRCN0000311917 GCATGAGCTTTAGAGTTTCTT pLKO_005 3106 3UTR 100% 5.625 7.875 N Copg2 n/a
5 TRCN0000380489 GTGAGTGCTTTGGCTAAATTT pLKO_005 1787 CDS 100% 15.000 10.500 N COPG2 n/a
6 TRCN0000312899 ACTCGATTGTTTCAATCTAAT pLKO_005 533 CDS 100% 13.200 9.240 N Copg2 n/a
7 TRCN0000100688 CCTTACAATCAGCCAGGAATA pLKO.1 2399 CDS 100% 10.800 7.560 N Copg2 n/a
8 TRCN0000100689 CCTGCAATCTGGACTTAGAAA pLKO.1 1284 CDS 100% 5.625 3.938 N Copg2 n/a
9 TRCN0000311916 CCTGCAATCTGGACTTAGAAA pLKO_005 1284 CDS 100% 5.625 3.938 N Copg2 n/a
10 TRCN0000100687 GCCTGCAATCTGGACTTAGAA pLKO.1 1283 CDS 100% 5.625 3.938 N Copg2 n/a
11 TRCN0000100686 CCCTCTATCTAGCAGGTGTAT pLKO.1 2784 CDS 100% 4.950 3.465 N Copg2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017321680.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.