Transcript: Human XM_024448275.1

PREDICTED: Homo sapiens synaptotagmin-15 (LOC102724488), transcript variant X11, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC102724488 (102724488)
Length:
7789
CDS:
2205..3470

Additional Resources:

NCBI RefSeq record:
XM_024448275.1
NBCI Gene record:
LOC102724488 (102724488)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024448275.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 4666 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
2 TRCN0000380085 TGTGGTTCTCGGTGGAATATG pLKO_005 2836 CDS 100% 13.200 6.600 Y SYT15 n/a
3 TRCN0000380074 GAATGGACCTGCAGGGTAAAC pLKO_005 3821 3UTR 100% 10.800 5.400 Y SYT15 n/a
4 TRCN0000059931 GCTGTGGTTCTCGGTGGAATA pLKO.1 2834 CDS 100% 10.800 5.400 Y SYT15 n/a
5 TRCN0000381456 CATCAACCCAGAGCTGTACAA pLKO_005 2762 CDS 100% 4.950 2.475 Y SYT15 n/a
6 TRCN0000379558 AGGTGTCCAGCAAGACCATCA pLKO_005 3034 CDS 100% 4.050 2.025 Y SYT15 n/a
7 TRCN0000382517 CAATCCAAGACCAAACGCAAA pLKO_005 2976 CDS 100% 4.050 2.025 Y SYT15 n/a
8 TRCN0000382172 GGTGCTGAAGTTCTCCGTCTA pLKO_005 3062 CDS 100% 4.050 2.025 Y SYT15 n/a
9 TRCN0000381073 TTGAAGAATGAGACCCTAGTG pLKO_005 3135 CDS 100% 4.050 2.025 Y SYT15 n/a
10 TRCN0000059929 CCAATCCAAGACCAAACGCAA pLKO.1 2975 CDS 100% 2.640 1.320 Y SYT15 n/a
11 TRCN0000059928 CCCTTGAAGAATGAGACCCTA pLKO.1 3132 CDS 100% 2.640 1.320 Y SYT15 n/a
12 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4775 3UTR 100% 5.625 2.813 Y KLHL30 n/a
13 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4775 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024448275.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.