Transcript: Human XM_024448325.1

PREDICTED: Homo sapiens DEAF1 transcription factor (DEAF1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DEAF1 (10522)
Length:
2425
CDS:
157..1842

Additional Resources:

NCBI RefSeq record:
XM_024448325.1
NBCI Gene record:
DEAF1 (10522)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024448325.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000020361 CTGATTGTCGTCCACACAGAT pLKO.1 598 CDS 100% 4.950 6.930 N DEAF1 n/a
2 TRCN0000020363 GTACCTAGAAGAGATGGTCAA pLKO.1 1518 CDS 100% 0.000 0.000 N DEAF1 n/a
3 TRCN0000232489 GAAGGAGCAGTCCTGCGTTAA pLKO_005 1653 CDS 100% 10.800 8.640 N DEAF1 n/a
4 TRCN0000232490 CAAGTCATTAACACACTTTAA pLKO_005 2232 3UTR 100% 13.200 9.240 N DEAF1 n/a
5 TRCN0000232486 TCATCCAGGATGGGATCTTAA pLKO_005 953 CDS 100% 13.200 9.240 N DEAF1 n/a
6 TRCN0000232487 CTGCGACGACATGACCTTAAG pLKO_005 1008 CDS 100% 10.800 7.560 N DEAF1 n/a
7 TRCN0000020362 AGGCGCAAGAAGGAGAATGAA pLKO.1 1060 CDS 100% 5.625 3.938 N DEAF1 n/a
8 TRCN0000020360 TGGAAGGATCACCAGCACATA pLKO.1 1999 3UTR 100% 4.950 3.465 N DEAF1 n/a
9 TRCN0000020359 CCCAAGAACATCACATTGCTT pLKO.1 1111 CDS 100% 3.000 2.100 N DEAF1 n/a
10 TRCN0000232488 TAGAGGCCACTGCTGTCATAT pLKO_005 1220 CDS 100% 13.200 7.920 N DEAF1 n/a
11 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 1819 CDS 100% 10.800 5.400 Y MRPS16 n/a
12 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 1819 CDS 100% 10.800 5.400 Y CD3EAP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024448325.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.