Transcript: Human XM_024448481.1

PREDICTED: Homo sapiens doublecortin domain containing 1 (DCDC1), transcript variant X12, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DCDC1 (341019)
Length:
4918
CDS:
108..4484

Additional Resources:

NCBI RefSeq record:
XM_024448481.1
NBCI Gene record:
DCDC1 (341019)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024448481.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000151323 GCTTCCAGTGAAATTCTAGAT pLKO.1 2400 CDS 100% 4.950 6.930 N n/a
2 TRCN0000156402 CCGAACAGACTCAACAGGAAA pLKO.1 3973 CDS 100% 4.950 3.960 N n/a
3 TRCN0000158176 CCCAATCTTTACCTTGCGTGA pLKO.1 3503 CDS 100% 2.160 1.728 N n/a
4 TRCN0000151195 GAGATGAACTGGTGTATGTTT pLKO.1 2110 CDS 100% 5.625 3.938 N n/a
5 TRCN0000151292 CAGAGCAAATTATGCCAGAAT pLKO.1 4379 CDS 100% 4.950 3.465 N n/a
6 TRCN0000155387 CCAATCTTTACCTTGCGTGAT pLKO.1 3504 CDS 100% 4.050 2.835 N n/a
7 TRCN0000157434 GCTTACCCTCATCCTCAGAAA pLKO.1 3716 CDS 100% 4.950 2.475 Y n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024448481.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.