Transcript: Human XM_024448591.1

PREDICTED: Homo sapiens BTG anti-proliferation factor 4 (BTG4), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BTG4 (54766)
Length:
2667
CDS:
468..1349

Additional Resources:

NCBI RefSeq record:
XM_024448591.1
NBCI Gene record:
BTG4 (54766)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024448591.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000117912 GCACTCTGATTGCCCTTCTAA pLKO.1 605 CDS 100% 5.625 7.875 N BTG4 n/a
2 TRCN0000129567 GCACTCTGATTGCCCTTCTAA pLKO.1 605 CDS 100% 5.625 7.875 N BTG4 n/a
3 TRCN0000129303 CTCCTGGGAAACACTTACCAT pLKO.1 1056 CDS 100% 3.000 4.200 N BTG4 n/a
4 TRCN0000117915 CCGAAGAGTATTTATCAGGTT pLKO.1 960 CDS 100% 2.640 3.696 N BTG4 n/a
5 TRCN0000127642 CAGGTGCATCAGGATAAACAA pLKO.1 638 CDS 100% 5.625 4.500 N BTG4 n/a
6 TRCN0000117914 CCCTTTCAATCTTGGTTACAA pLKO.1 996 CDS 100% 5.625 4.500 N BTG4 n/a
7 TRCN0000117916 CACTCTGATTGCCCTTCTAAA pLKO.1 606 CDS 100% 13.200 9.240 N BTG4 n/a
8 TRCN0000130816 GAACCTCGTGTCATTCCTAAA pLKO.1 930 CDS 100% 10.800 7.560 N BTG4 n/a
9 TRCN0000129734 CTTTGTCACAAGATTGGTGAA pLKO.1 497 CDS 100% 4.050 2.835 N BTG4 n/a
10 TRCN0000117913 CGATGAAGAAAGTTGTAGCAA pLKO.1 908 CDS 100% 3.000 2.100 N BTG4 n/a
11 TRCN0000129673 CGATGAAGAAAGTTGTAGCAA pLKO.1 908 CDS 100% 3.000 2.100 N BTG4 n/a
12 TRCN0000127866 GCGATGAAGAAAGTTGTAGCA pLKO.1 907 CDS 100% 2.640 1.848 N BTG4 n/a
13 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 1368 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
14 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 1343 CDS 100% 2.640 1.320 Y LINC01098 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024448591.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.