Transcript: Human XM_024449580.1

PREDICTED: Homo sapiens HEAT repeat containing 4 (HEATR4), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HEATR4 (399671)
Length:
3774
CDS:
572..3652

Additional Resources:

NCBI RefSeq record:
XM_024449580.1
NBCI Gene record:
HEATR4 (399671)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024449580.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435911 ACACCGCAAGAGCCAATATTT pLKO_005 742 CDS 100% 15.000 21.000 N HEATR4 n/a
2 TRCN0000419287 TGAGAAGGATGTGCCTATTAA pLKO_005 1858 CDS 100% 15.000 21.000 N HEATR4 n/a
3 TRCN0000434946 GATAGGTGAGCTCAAGCTTAT pLKO_005 2728 CDS 100% 10.800 15.120 N HEATR4 n/a
4 TRCN0000137489 GCACCAAATCCCTGGTTACAA pLKO.1 3431 CDS 100% 5.625 4.500 N HEATR4 n/a
5 TRCN0000168746 GCTTCCCGTTTACTACAGATT pLKO.1 1435 CDS 100% 4.950 3.960 N HEATR4 n/a
6 TRCN0000134988 CAGCTCTTTATCTGGGTAAAT pLKO.1 3564 CDS 100% 13.200 9.240 N HEATR4 n/a
7 TRCN0000168343 GCAGCAGCAATATGCCAATAT pLKO.1 2213 CDS 100% 13.200 9.240 N HEATR4 n/a
8 TRCN0000416203 ATGATGACGTTCGGATCAAAG pLKO_005 2043 CDS 100% 10.800 7.560 N HEATR4 n/a
9 TRCN0000421182 CCCAAACCCAGAGCTACTTTC pLKO_005 1548 CDS 100% 10.800 7.560 N HEATR4 n/a
10 TRCN0000432003 GAACTGCTGCTTCCCGTTTAC pLKO_005 1427 CDS 100% 10.800 7.560 N HEATR4 n/a
11 TRCN0000137289 GCACCATGAGACAGTAGAGAA pLKO.1 1996 CDS 100% 4.950 3.465 N HEATR4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024449580.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.