Transcript: Human XM_024450300.1

PREDICTED: Homo sapiens polycystin 1, transient receptor potential channel interacting (PKD1), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PKD1 (5310)
Length:
14052
CDS:
212..13033

Additional Resources:

NCBI RefSeq record:
XM_024450300.1
NBCI Gene record:
PKD1 (5310)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024450300.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000062322 GTCCGTCTTTGGCAAGACATT pLKO.1 12157 CDS 100% 0.495 0.347 N PKD1 n/a
2 TRCN0000062319 GCCATTTACCACCCATAGCTT pLKO.1 5413 CDS 100% 3.000 1.800 N PKD1 n/a
3 TRCN0000417410 TGACCGTGCTGGCATCTAATG pLKO_005 3429 CDS 100% 10.800 5.400 Y PKD1 n/a
4 TRCN0000062320 CGAGGAGTTCTGTGTCTACAA pLKO.1 7687 CDS 100% 4.950 2.475 Y PKD1 n/a
5 TRCN0000062318 GCTTTGTGTTTGTCGTGTCAT pLKO.1 6807 CDS 100% 4.950 2.475 Y PKD1 n/a
6 TRCN0000062321 GCTATGGAGAGAGTTCCTCTT pLKO.1 2044 CDS 100% 4.050 2.025 Y PKD1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024450300.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.