Transcript: Human XM_024450801.1

PREDICTED: Homo sapiens cyclin dependent kinase 12 (CDK12), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CDK12 (51755)
Length:
7217
CDS:
587..4768

Additional Resources:

NCBI RefSeq record:
XM_024450801.1
NBCI Gene record:
CDK12 (51755)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024450801.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000237811 GCGTTCCCGGGACTTACTAAA pLKO_005 937 CDS 100% 13.200 18.480 N CDK12 n/a
2 TRCN0000364126 TTGGACTTGCTCGGCTCTATA pLKO_005 3219 CDS 100% 13.200 18.480 N CDK12 n/a
3 TRCN0000237812 ATCGAAGCACAAGCGGCATAA pLKO_005 703 CDS 100% 10.800 15.120 N CDK12 n/a
4 TRCN0000364125 ATCGATGAAGGACCGGATATC pLKO_005 1009 CDS 100% 10.800 15.120 N CDK12 n/a
5 TRCN0000368334 CAGTTCACGCAGTCGTCATTC pLKO_005 1711 CDS 100% 10.800 15.120 N CDK12 n/a
6 TRCN0000197022 GATCGATGAAGGACCGGATAT pLKO.1 1008 CDS 100% 10.800 15.120 N CDK12 n/a
7 TRCN0000368335 ATTTCCTGCATCGGGATATTA pLKO_005 3147 CDS 100% 15.000 12.000 N CDK12 n/a
8 TRCN0000364122 GGGCACAAAGACCGGAGTAAA pLKO_005 1163 CDS 100% 13.200 10.560 N CDK12 n/a
9 TRCN0000196423 GAAGTAGAAGTCCTGCATATT pLKO.1 1653 CDS 100% 13.200 9.240 N CDK12 n/a
10 TRCN0000364124 GGAACCTATGGCCAAGTATAT pLKO_005 2792 CDS 100% 13.200 9.240 N CDK12 n/a
11 TRCN0000001795 GCTCGGCTCTATAACTCTGAA pLKO.1 3227 CDS 100% 4.950 3.465 N CDK12 n/a
12 TRCN0000023037 CCAGAAGTAGAAGTCCTGCAT pLKO.1 1650 CDS 100% 2.640 1.848 N Cdk12 n/a
13 TRCN0000351012 CCAGAAGTAGAAGTCCTGCAT pLKO_005 1650 CDS 100% 2.640 1.848 N Cdk12 n/a
14 TRCN0000001796 GCTGCTTAACATCCACTCCAA pLKO.1 3994 CDS 100% 2.640 1.848 N CDK12 n/a
15 TRCN0000235471 TACCTTGTATTTGAGTATATG pLKO_005 3014 CDS 100% 0.000 0.000 N CDK12 n/a
16 TRCN0000235472 CCACCTCAGCAACCATATAAA pLKO_005 2663 CDS 100% 15.000 9.000 N CDK12 n/a
17 TRCN0000001798 GCACTGAAAGAGGAGATTGTT pLKO.1 2105 CDS 100% 5.625 3.375 N CDK12 n/a
18 TRCN0000023036 GCAGTGTTATTAAACCTGCTT pLKO.1 3935 CDS 100% 2.640 1.848 N Cdk12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024450801.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.