Transcript: Human XM_024452398.1

PREDICTED: Homo sapiens taxilin gamma (TXLNG), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TXLNG (55787)
Length:
5237
CDS:
1015..2484

Additional Resources:

NCBI RefSeq record:
XM_024452398.1
NBCI Gene record:
TXLNG (55787)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024452398.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000142856 CAGCGTCACAATAAGACGTTA pLKO.1 1543 CDS 100% 4.950 6.930 N TXLNG n/a
2 TRCN0000139267 CGACGTAAAGAAGCAACTGCA pLKO.1 1603 CDS 100% 2.640 3.696 N TXLNG n/a
3 TRCN0000140635 GCTCAAATTGTGGTGGCACAA pLKO.1 1100 CDS 100% 0.405 0.324 N TXLNG n/a
4 TRCN0000144587 GCAAACGACACAACTGATAAA pLKO.1 1824 CDS 100% 13.200 9.240 N TXLNG n/a
5 TRCN0000121858 GCACAAGTAACAAGCATTCAT pLKO.1 1115 CDS 100% 5.625 3.938 N TXLNG n/a
6 TRCN0000139886 GCAGCAAACGACACAACTGAT pLKO.1 1821 CDS 100% 4.950 3.465 N TXLNG n/a
7 TRCN0000143550 GAGTGAACATAGCAAGGCTAT pLKO.1 1482 CDS 100% 4.050 2.835 N TXLNG n/a
8 TRCN0000144613 GCAAGAATCAAGAGAGGAAAT pLKO.1 1203 CDS 100% 10.800 6.480 N TXLNG n/a
9 TRCN0000139266 CTCCACTGGAATGCATGTGTT pLKO.1 2706 3UTR 100% 4.950 2.970 N TXLNG n/a
10 TRCN0000143605 GCAAATGAAGATCCTGCAGAA pLKO.1 1422 CDS 100% 4.050 2.430 N TXLNG n/a
11 TRCN0000128404 GCAGCTCTCTGTAAGAAATAT pLKO.1 1366 CDS 100% 15.000 7.500 Y TXLNGY n/a
12 TRCN0000128355 GCAGATATGTTGTGTAACTCT pLKO.1 1051 CDS 100% 3.000 1.500 Y TXLNGY n/a
13 TRCN0000140138 GCACAATGGAAGAAGCTGGAA pLKO.1 1010 5UTR 100% 2.640 1.320 Y TXLNG n/a
14 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 48 5UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024452398.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.