Transcript: Human XM_024454272.1

PREDICTED: Homo sapiens solute carrier family 4 member 4 (SLC4A4), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC4A4 (8671)
Length:
6514
CDS:
23..3262

Additional Resources:

NCBI RefSeq record:
XM_024454272.1
NBCI Gene record:
SLC4A4 (8671)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024454272.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000314104 TCTACTGACATGTACCATAAT pLKO_005 1985 CDS 100% 13.200 18.480 N Slc4a4 n/a
2 TRCN0000043140 CCCAGAGTATTTGCCAACTAT pLKO.1 1960 CDS 100% 5.625 7.875 N SLC4A4 n/a
3 TRCN0000043139 GCCTATTGAAACCTGAACTTA pLKO.1 603 CDS 100% 5.625 7.875 N SLC4A4 n/a
4 TRCN0000069883 GCTCCCATCTTGAAGTTTATA pLKO.1 2702 CDS 100% 15.000 10.500 N Slc4a4 n/a
5 TRCN0000043138 CCGGCTTTGTTGGTCACTATA pLKO.1 2381 CDS 100% 13.200 9.240 N SLC4A4 n/a
6 TRCN0000043141 CCTTTCCTAAGCGATAGCAAA pLKO.1 3188 CDS 100% 4.950 3.465 N SLC4A4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024454272.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.