Transcript: Mouse XM_030244179.1

PREDICTED: Mus musculus unc-13 homolog C (Unc13c), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Unc13c (208898)
Length:
9041
CDS:
931..7593

Additional Resources:

NCBI RefSeq record:
XM_030244179.1
NBCI Gene record:
Unc13c (208898)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_030244179.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000028216 CCACGATTACATTAAACACTT pLKO.1 1836 CDS 100% 4.950 6.930 N Unc13c n/a
2 TRCN0000028247 GCTCGAATAGTAAGTGGCAAT pLKO.1 3925 CDS 100% 4.050 5.670 N Unc13c n/a
3 TRCN0000027757 GCTCAGCTTAACCAGAGCTTT pLKO.1 6130 CDS 100% 4.950 3.960 N LOC235480 n/a
4 TRCN0000027685 GCCCGAGAAGATCGAATAATT pLKO.1 7375 CDS 100% 15.000 10.500 N LOC235480 n/a
5 TRCN0000027758 GCTCTGGAAATTAGTACTTAA pLKO.1 6702 CDS 100% 13.200 9.240 N LOC235480 n/a
6 TRCN0000028236 CCCATCCTAGTGTACTTTGAA pLKO.1 2047 CDS 100% 5.625 3.938 N Unc13c n/a
7 TRCN0000027720 CTAAAGAGTTTGTGAGACTTA pLKO.1 7538 CDS 100% 4.950 3.465 N LOC235480 n/a
8 TRCN0000028262 GCCAATTCTAATGACCTGTAT pLKO.1 3148 CDS 100% 4.950 3.465 N Unc13c n/a
9 TRCN0000027762 GCCTTGCATATTGATGAACAA pLKO.1 6297 CDS 100% 4.950 3.465 N LOC235480 n/a
10 TRCN0000028215 CCAGACTATCATCACAGCCAT pLKO.1 4410 CDS 100% 2.640 1.848 N Unc13c n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_030244179.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.