Transcript: Human XR_001738947.2

PREDICTED: Homo sapiens calcium responsive transcription factor (CARF), transcript variant X11, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CARF (79800)
Length:
1710
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001738947.2
NBCI Gene record:
CARF (79800)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001738947.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000151951 CCAGCTCGGATTTACATTAAA pLKO.1 1202 3UTR 100% 15.000 21.000 N CARF n/a
2 TRCN0000256023 TATATGGGCCTGCCGTCTTAG pLKO_005 868 3UTR 100% 10.800 15.120 N CARF n/a
3 TRCN0000156177 CCCTCACGTTTACATCCTCAA pLKO.1 1496 3UTR 100% 4.050 5.670 N CARF n/a
4 TRCN0000265737 TGGACAGGTACTTCGTGTAAT pLKO_005 589 3UTR 100% 13.200 10.560 N CARF n/a
5 TRCN0000256022 GGAATGGCACAAGTGATTATA pLKO_005 626 3UTR 100% 15.000 10.500 N CARF n/a
6 TRCN0000256027 CACTCATATCACAGAATATAC pLKO_005 426 3UTR 100% 13.200 9.240 N CARF n/a
7 TRCN0000256024 TTAGAAAGTGTCCTAACATTT pLKO_005 944 3UTR 100% 13.200 9.240 N CARF n/a
8 TRCN0000150616 GAAACCCAGTAACAGAAACTT pLKO.1 697 3UTR 100% 5.625 3.938 N CARF n/a
9 TRCN0000153667 CATCACTACTCGTGAAGCAAA pLKO.1 400 3UTR 100% 4.950 3.465 N CARF n/a
10 TRCN0000150930 GCAGGCTATTCAATATGAACT pLKO.1 511 3UTR 100% 4.950 3.465 N CARF n/a
11 TRCN0000152252 CATTTGTTAATGCAGGGAGTA pLKO.1 1074 3UTR 100% 4.050 2.835 N CARF n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001738947.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.