Transcript: Human XR_001742052.2

PREDICTED: Homo sapiens cytoplasmic FMR1 interacting protein 2 (CYFIP2), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CYFIP2 (26999)
Length:
3152
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001742052.2
NBCI Gene record:
CYFIP2 (26999)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001742052.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242604 TCATGTACCAGGCTAACTTTG pLKO_005 212 3UTR 100% 10.800 15.120 N CYFIP2 n/a
2 TRCN0000244625 CAGCTGTTGGGTAGATCAATT pLKO_005 2368 3UTR 100% 13.200 9.240 N CYFIP2 n/a
3 TRCN0000242601 ACAACGACAGCGCCTACTATG pLKO_005 2114 3UTR 100% 10.800 7.560 N CYFIP2 n/a
4 TRCN0000180785 GCTGGCTGACATTGTCAACAT pLKO.1 816 3UTR 100% 4.950 3.465 N CYFIP2 n/a
5 TRCN0000181001 GCCTCTACCTAATGGATGGAA pLKO.1 914 3UTR 100% 3.000 2.100 N CYFIP2 n/a
6 TRCN0000242603 TGCTGTCCTGGATGAGCTAAA pLKO_005 609 3UTR 100% 10.800 6.480 N CYFIP2 n/a
7 TRCN0000097701 CCTGGATTCTAACGGACCATA pLKO.1 2036 3UTR 100% 4.950 2.970 N Cyfip2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001742052.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.