Transcript: Human XR_001745525.2

PREDICTED: Homo sapiens F-box protein 43 (FBXO43), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FBXO43 (286151)
Length:
3448
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001745525.2
NBCI Gene record:
FBXO43 (286151)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001745525.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000167841 GCTTAACACATCCTTTAGAAT pLKO.1 647 3UTR 100% 5.625 7.875 N FBXO43 n/a
2 TRCN0000433207 GCTAAGTACCAGCCATATAAG pLKO_005 3014 3UTR 100% 13.200 10.560 N FBXO43 n/a
3 TRCN0000167173 CGTGAAATTGTTGTTCAAGAT pLKO.1 2032 3UTR 100% 4.950 3.960 N FBXO43 n/a
4 TRCN0000220056 GCCCAGAGTAAGCGGAATTTA pLKO.1 3170 3UTR 100% 15.000 10.500 N FBXO43 n/a
5 TRCN0000427009 GGACATCTTAACAGAATTAAA pLKO_005 1791 3UTR 100% 15.000 10.500 N FBXO43 n/a
6 TRCN0000220057 TAATGACAGGTGATGATTAAT pLKO.1 3291 3UTR 100% 15.000 10.500 N FBXO43 n/a
7 TRCN0000420916 TGTGGCAAACATTAGATTTAA pLKO_005 1224 3UTR 100% 15.000 10.500 N FBXO43 n/a
8 TRCN0000167571 GCCAAGTTATCAACTTAGAAA pLKO.1 848 3UTR 100% 5.625 3.938 N FBXO43 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001745525.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.