Transcript: Human XR_001746205.2

PREDICTED: Homo sapiens KIAA2026 (KIAA2026), transcript variant X21, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KIAA2026 (158358)
Length:
4234
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001746205.2
NBCI Gene record:
KIAA2026 (158358)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001746205.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365630 GATTGAACCCAGTCCATTAAA pLKO_005 2580 3UTR 100% 15.000 21.000 N KIAA2026 n/a
2 TRCN0000365558 GTTACATCTAGAGGCTATTAT pLKO_005 1324 3UTR 100% 15.000 21.000 N KIAA2026 n/a
3 TRCN0000370707 GACTATGTTAGTACAAGTAAT pLKO_005 2245 3UTR 100% 13.200 18.480 N KIAA2026 n/a
4 TRCN0000017446 GCAGGGAAGTTATTCTTGGTT pLKO.1 2069 3UTR 100% 3.000 2.100 N KIAA2026 n/a
5 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4207 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001746205.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.