Transcript: Human XR_001747014.1

PREDICTED: Homo sapiens cilia and flagella associated protein 70 (CFAP70), transcript variant X21, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CFAP70 (118491)
Length:
4830
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001747014.1
NBCI Gene record:
CFAP70 (118491)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001747014.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431893 GATGTGCAGGCACCTAGTATA pLKO_005 2816 3UTR 100% 13.200 18.480 N CFAP70 n/a
2 TRCN0000136258 GACAGCGAATTTAGGAATCAA pLKO.1 2321 3UTR 100% 5.625 7.875 N CFAP70 n/a
3 TRCN0000135248 CCTTAGAAACTCCTAGATCAA pLKO.1 1929 3UTR 100% 4.950 6.930 N CFAP70 n/a
4 TRCN0000430753 AGGCACTGTTGCAACCATTTA pLKO_005 3403 3UTR 100% 13.200 9.240 N CFAP70 n/a
5 TRCN0000433890 CAGATGCATGTAGCCCTAAAC pLKO_005 3359 3UTR 100% 10.800 7.560 N CFAP70 n/a
6 TRCN0000135365 GCAGAAGTCAATGAGAACTTT pLKO.1 3461 3UTR 100% 5.625 3.938 N CFAP70 n/a
7 TRCN0000138727 GCTGTCCTGTTGGAGAACTAT pLKO.1 3665 3UTR 100% 5.625 3.938 N CFAP70 n/a
8 TRCN0000138209 CAAGAGTTCCTCTGGTCACTA pLKO.1 2463 3UTR 100% 4.950 3.465 N CFAP70 n/a
9 TRCN0000136967 CCTCCTAACTGAAGACAACAT pLKO.1 3565 3UTR 100% 4.950 3.465 N CFAP70 n/a
10 TRCN0000138011 GCATTTCATGAGGCCTCCAAA pLKO.1 3803 3UTR 100% 4.950 3.465 N CFAP70 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001747014.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.