Transcript: Human XR_001747254.2

PREDICTED: Homo sapiens golgi brefeldin A resistant guanine nucleotide exchange factor 1 (GBF1), transcript variant X14, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GBF1 (8729)
Length:
3701
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001747254.2
NBCI Gene record:
GBF1 (8729)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001747254.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000154341 CTGCATAGTTTCGGTCATCTA pLKO.1 379 3UTR 100% 4.950 6.930 N GBF1 n/a
2 TRCN0000278956 CTGCATAGTTTCGGTCATCTA pLKO_005 379 3UTR 100% 4.950 6.930 N GBF1 n/a
3 TRCN0000157212 GCGAGTATGCTTCCTACTGTT pLKO.1 1794 3UTR 100% 4.950 6.930 N GBF1 n/a
4 TRCN0000158157 CCATCAAACGAAATGCCCGAT pLKO.1 317 3UTR 100% 2.160 3.024 N GBF1 n/a
5 TRCN0000109968 CCACGGGAACTAATTGAAATT pLKO.1 2431 3UTR 100% 13.200 10.560 N Gbf1 n/a
6 TRCN0000326913 CCACGGGAACTAATTGAAATT pLKO_005 2431 3UTR 100% 13.200 10.560 N Gbf1 n/a
7 TRCN0000156557 GCAGCCAAGACAGTATTCCAT pLKO.1 3291 3UTR 100% 3.000 2.100 N GBF1 n/a
8 TRCN0000306494 ACTATGATTGTGACTACTATT pLKO_005 1985 3UTR 100% 13.200 9.240 N Gbf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001747254.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.