Transcript: Human XR_001747718.2

PREDICTED: Homo sapiens protein arginine methyltransferase 3 (PRMT3), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PRMT3 (10196)
Length:
4128
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001747718.2
NBCI Gene record:
PRMT3 (10196)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001747718.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034570 CCTTGTGGTATTAAGCATATA pLKO.1 1330 3UTR 100% 13.200 18.480 N PRMT3 n/a
2 TRCN0000299321 CCTTGTGGTATTAAGCATATA pLKO_005 1330 3UTR 100% 13.200 18.480 N PRMT3 n/a
3 TRCN0000379742 GACGTTTGCTCCACCAGATTT pLKO_005 1900 3UTR 100% 13.200 18.480 N PRMT3 n/a
4 TRCN0000034572 GCAGTGAGTGATGTGAATAAA pLKO.1 1189 3UTR 100% 15.000 10.500 N PRMT3 n/a
5 TRCN0000299322 GCAGTGAGTGATGTGAATAAA pLKO_005 1189 3UTR 100% 15.000 10.500 N PRMT3 n/a
6 TRCN0000034571 GCTGGCTACTTTGATATATAT pLKO.1 1438 3UTR 100% 15.000 10.500 N PRMT3 n/a
7 TRCN0000034573 CGTGACCCTCACGTTGAATAA pLKO.1 1632 3UTR 100% 13.200 9.240 N PRMT3 n/a
8 TRCN0000299323 CGTGACCCTCACGTTGAATAA pLKO_005 1632 3UTR 100% 13.200 9.240 N PRMT3 n/a
9 TRCN0000380837 TGGTCTGCCACGTAATCATTT pLKO_005 1874 3UTR 100% 13.200 9.240 N PRMT3 n/a
10 TRCN0000034569 CCTTGGGAGAAAGAAGAGTAT pLKO.1 524 3UTR 100% 4.950 3.465 N PRMT3 n/a
11 TRCN0000299324 CCTTGGGAGAAAGAAGAGTAT pLKO_005 524 3UTR 100% 4.950 3.465 N PRMT3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001747718.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.