Transcript: Human XR_001747993.1

PREDICTED: Homo sapiens phosphatidylserine synthase 2 (PTDSS2), transcript variant X10, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PTDSS2 (81490)
Length:
1776
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001747993.1
NBCI Gene record:
PTDSS2 (81490)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001747993.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000257416 GCCGGCAGTTTCTAAAGTATG pLKO_005 422 3UTR 100% 10.800 15.120 N PTDSS2 n/a
2 TRCN0000045799 GCGTGAGATCTACGACTTCAT pLKO.1 1059 3UTR 100% 4.950 6.930 N PTDSS2 n/a
3 TRCN0000229307 ACGAGCTGTTTCTCATCTTTA pLKO_005 377 3UTR 100% 13.200 9.240 N PTDSS2 n/a
4 TRCN0000045798 CGGCAGTTTCTAAAGTATGTT pLKO.1 424 3UTR 100% 5.625 3.938 N PTDSS2 n/a
5 TRCN0000045802 CCACACCTTAACCGTGCTCTT pLKO.1 245 3UTR 100% 4.050 2.835 N PTDSS2 n/a
6 TRCN0000045801 GTACCTGAAGACCCTGATGAT pLKO.1 585 3UTR 100% 0.000 0.000 N PTDSS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001747993.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.