Transcript: Human XR_001748043.2

PREDICTED: Homo sapiens neurexin 2 (NRXN2), transcript variant X26, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NRXN2 (9379)
Length:
4387
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001748043.2
NBCI Gene record:
NRXN2 (9379)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001748043.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000139408 CCATAGTAAGCGACGGCAAAT pLKO.1 3677 3UTR 100% 10.800 15.120 N NRXN2 n/a
2 TRCN0000433582 CCTCAAGGACGTGGTCTATAA pLKO_005 1365 3UTR 100% 13.200 10.560 N NRXN2 n/a
3 TRCN0000094487 CCCGGCAGGAAACTTTGATAA pLKO.1 3774 3UTR 100% 13.200 9.240 N Nrxn2 n/a
4 TRCN0000140984 CAATGGCAAGTTCAACGACAA pLKO.1 1107 3UTR 100% 4.050 2.835 N NRXN2 n/a
5 TRCN0000139375 CGACCTTCAAAGGCAATGAGT pLKO.1 884 3UTR 100% 3.000 2.100 N NRXN2 n/a
6 TRCN0000143238 GAAGAACAAAGACAAGGAGTA pLKO.1 4225 3UTR 100% 4.050 2.430 N NRXN2 n/a
7 TRCN0000140179 GCACCTCTTCTTCCAGTTCAA pLKO.1 2844 3UTR 100% 4.950 2.475 Y NRXN2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001748043.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.