Transcript: Human XR_001749637.1

PREDICTED: Homo sapiens exportin 4 (XPO4), transcript variant X12, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
XPO4 (64328)
Length:
5161
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001749637.1
NBCI Gene record:
XPO4 (64328)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001749637.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000377513 TAACCGTGTTCCCACGAAATG pLKO_005 1091 3UTR 100% 10.800 15.120 N XPO4 n/a
2 TRCN0000159918 CCCTAGAATTAGGAATGACAT pLKO.1 4729 3UTR 100% 4.950 6.930 N XPO4 n/a
3 TRCN0000165701 CCCAGATTGACAACGTAGCAA pLKO.1 2314 3UTR 100% 3.000 4.200 N XPO4 n/a
4 TRCN0000377512 ATCGAGTCTCTGCGAACATTC pLKO_005 304 3UTR 100% 10.800 8.640 N XPO4 n/a
5 TRCN0000370130 GCCGAAGCCCACCTCTTAATT pLKO_005 2062 3UTR 100% 15.000 10.500 N XPO4 n/a
6 TRCN0000376566 TTGCAGTTTGCAAGCATATTT pLKO_005 188 3UTR 100% 15.000 10.500 N XPO4 n/a
7 TRCN0000159748 GCACATAAACAGATATGCTAT pLKO.1 2445 3UTR 100% 4.950 3.465 N XPO4 n/a
8 TRCN0000136382 CACCTGTAATTCCAGCACTTT pLKO.1 4899 3UTR 100% 4.950 2.475 Y CENPL n/a
9 TRCN0000127601 CGCTTGTAATCCCAGCACTTT pLKO.1 3548 3UTR 100% 4.950 2.475 Y CCDC30 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001749637.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.