Transcript: Human XR_001753251.2

PREDICTED: Homo sapiens RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing (RELCH), transcript variant X8, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RELCH (57614)
Length:
3741
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001753251.2
NBCI Gene record:
RELCH (57614)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001753251.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263293 AGGAGTCCTTACGTGTTATAT pLKO_005 3011 3UTR 100% 15.000 21.000 N RELCH n/a
2 TRCN0000263295 AGGCCCTTACACCAATTATAA pLKO_005 1252 3UTR 100% 15.000 10.500 N RELCH n/a
3 TRCN0000282560 ATGGGATGATGTAGGATTAAA pLKO_005 1121 3UTR 100% 15.000 10.500 N RELCH n/a
4 TRCN0000263296 TCAAGATGTGTCCACTATTAT pLKO_005 2657 3UTR 100% 15.000 10.500 N RELCH n/a
5 TRCN0000425624 GAGTTTGTTATACCACATTTA pLKO_005 3680 3UTR 100% 13.200 9.240 N 2310035C23Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001753251.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.