Transcript: Human XR_001755376.1

PREDICTED: Homo sapiens GTP binding protein 1 (GTPBP1), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GTPBP1 (9567)
Length:
3760
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001755376.1
NBCI Gene record:
GTPBP1 (9567)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001755376.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000293695 TCCAAGCCGCAGCAGATTAAA pLKO_005 3160 3UTR 100% 15.000 21.000 N GTPBP1 n/a
2 TRCN0000249960 GGATGCGGAGAGACCATATAT pLKO_005 1651 3UTR 100% 15.000 12.000 N Gtpbp1 n/a
3 TRCN0000293718 GGATGCGGAGAGACCATATAT pLKO_005 1651 3UTR 100% 15.000 12.000 N GTPBP1 n/a
4 TRCN0000047444 GCACTCAATGTACCTGTCTTT pLKO.1 2302 3UTR 100% 4.950 3.960 N GTPBP1 n/a
5 TRCN0000286315 GCACTCAATGTACCTGTCTTT pLKO_005 2302 3UTR 100% 4.950 3.960 N GTPBP1 n/a
6 TRCN0000047447 GCAGAGCAAAGATGATGTGAT pLKO.1 2433 3UTR 100% 4.950 3.465 N GTPBP1 n/a
7 TRCN0000047445 CTTGGGTAACTTCCTGTCCAT pLKO.1 2709 3UTR 100% 2.640 1.848 N GTPBP1 n/a
8 TRCN0000047446 GCGGAACAGATAGAGGCCGAT pLKO.1 1756 3UTR 100% 0.720 0.504 N GTPBP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001755376.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.