Transcript: Mouse XR_001778002.1

PREDICTED: Mus musculus echinoderm microtubule associated protein like 2 (Eml2), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Eml2 (72205)
Length:
3726
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001778002.1
NBCI Gene record:
Eml2 (72205)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001778002.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000089619 CCTGTTCGAGAAACACGAGAA pLKO.1 1506 3UTR 100% 4.050 5.670 N Eml2 n/a
2 TRCN0000089622 CCATGTGACTAATGTGGCCTT pLKO.1 3362 3UTR 100% 2.160 3.024 N Eml2 n/a
3 TRCN0000089620 GCTATCCACACAGATGGCAAT pLKO.1 2134 3UTR 100% 4.050 2.835 N Eml2 n/a
4 TRCN0000089618 CAGTAATATATACCCAGAGTA pLKO.1 3532 3UTR 100% 4.950 2.970 N Eml2 n/a
5 TRCN0000086233 CCTTCCTTTCTTTCTTTCTTT pLKO.1 3011 3UTR 100% 5.625 2.813 Y Pou1f1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001778002.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.