Transcript: Mouse XR_001778462.1

PREDICTED: Mus musculus ceramide synthase 4 (Cers4), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cers4 (67260)
Length:
1642
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001778462.1
NBCI Gene record:
Cers4 (67260)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001778462.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000337890 TCTTCTACACGCGCCTCATAT pLKO_005 1337 3UTR 100% 13.200 18.480 N Cers4 n/a
2 TRCN0000337886 TGGTTGTGGTCGCCATCATTG pLKO_005 752 3UTR 100% 10.800 15.120 N Cers4 n/a
3 TRCN0000337888 TACCTGCTGGAGGGTTGTAAG pLKO_005 1252 3UTR 100% 0.000 0.000 N Cers4 n/a
4 TRCN0000337889 CTTTCACTGCTGATCACTTTG pLKO_005 848 3UTR 100% 10.800 7.560 N Cers4 n/a
5 TRCN0000125386 GCGAATTGTCTTTGAGAGATT pLKO.1 433 3UTR 100% 4.950 3.465 N Cers4 n/a
6 TRCN0000125385 GCTGTGGTACTGTTGTTGCAT pLKO.1 1219 3UTR 100% 3.000 2.100 N Cers4 n/a
7 TRCN0000125387 GCCCTTTGATGTCAAACGCAA pLKO.1 868 3UTR 100% 2.640 1.848 N Cers4 n/a
8 TRCN0000125388 GCTACAGATTCTTCATGTGTA pLKO.1 1592 3UTR 100% 4.950 2.970 N Cers4 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001778462.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.