Transcript: Mouse XR_001782056.1

PREDICTED: Mus musculus K(lysine) acetyltransferase 2B (Kat2b), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Kat2b (18519)
Length:
4560
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001782056.1
NBCI Gene record:
Kat2b (18519)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001782056.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000039382 CCGGGATATTATGAAGTTATA pLKO.1 2481 3UTR 100% 13.200 18.480 N Kat2b n/a
2 TRCN0000362933 TCCCGAGAGCGAGTACTACAA pLKO_005 2621 3UTR 100% 4.950 6.930 N Kat2b n/a
3 TRCN0000226325 AGTGGTATCTAGACTATTAAT pLKO_005 4191 3UTR 100% 15.000 12.000 N Kat2b n/a
4 TRCN0000362935 ATGGAACATGAGAGTTTATTT pLKO_005 3106 3UTR 100% 15.000 10.500 N Kat2b n/a
5 TRCN0000219056 GCTAGGAATCCAAACAGTAAT pLKO_005 1483 3UTR 100% 13.200 9.240 N Kat2b n/a
6 TRCN0000362860 TTGCACACAGTACCAAGATTT pLKO_005 3035 3UTR 100% 13.200 9.240 N Kat2b n/a
7 TRCN0000226322 CAGCAGATAATTGTCAGTTTG pLKO_005 725 3UTR 100% 10.800 7.560 N Kat2b n/a
8 TRCN0000226323 TCTTGAGAAACGCACGCTTAT pLKO_005 1354 3UTR 100% 10.800 7.560 N Kat2b n/a
9 TRCN0000039381 CAGTAATCAGTCCTCCTGTTA pLKO.1 1497 3UTR 100% 4.950 3.465 N Kat2b n/a
10 TRCN0000039383 GCACGCTTATCCTCACACATT pLKO.1 1365 3UTR 100% 4.950 3.465 N Kat2b n/a
11 TRCN0000039379 GCAGGTGAAGAACCATCCAAA pLKO.1 2420 3UTR 100% 4.950 3.465 N Kat2b n/a
12 TRCN0000039380 CTCTTGAGAAACGCACGCTTA pLKO.1 1353 3UTR 100% 4.050 2.835 N Kat2b n/a
13 TRCN0000226324 TGAGTATGCCATCGGCTATTT pLKO_005 2039 3UTR 100% 13.200 7.920 N Kat2b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001782056.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.