Transcript: Mouse XR_001782881.1

PREDICTED: Mus musculus lysine (K)-specific demethylase 5D (Kdm5d), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Kdm5d (20592)
Length:
7966
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001782881.1
NBCI Gene record:
Kdm5d (20592)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001782881.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098108 GCAATGTAACACAGATCCATT pLKO.1 845 3UTR 100% 4.950 6.930 N Kdm5d n/a
2 TRCN0000098106 CCTTTACTACACCTATCTTAT pLKO.1 7523 3UTR 100% 13.200 10.560 N Kdm5d n/a
3 TRCN0000098107 GCAGAACACTTAGAGGATGTA pLKO.1 1944 3UTR 100% 4.950 3.960 N Kdm5d n/a
4 TRCN0000098105 CCTAAGAAGTATTCCCTGTAT pLKO.1 7826 3UTR 100% 4.950 3.465 N Kdm5d n/a
5 TRCN0000098109 GCCTGTTATGACTGTCCAGAT pLKO.1 2585 3UTR 100% 4.050 2.835 N Kdm5d n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001782881.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.