Transcript: Mouse XR_001784680.1

PREDICTED: Mus musculus checkpoint with forkhead and ring finger domains (Chfr), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Chfr (231600)
Length:
4047
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001784680.1
NBCI Gene record:
Chfr (231600)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001784680.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000124630 CGCAGTTCACTTGTTGCAAAT pLKO.1 843 3UTR 100% 10.800 15.120 N Chfr n/a
2 TRCN0000124632 CAGCACCAATGGAACAGTGAT pLKO.1 422 3UTR 100% 4.950 6.930 N Chfr n/a
3 TRCN0000124629 GCCATGTCATCTGGAATAATA pLKO.1 3922 3UTR 100% 15.000 10.500 N Chfr n/a
4 TRCN0000124633 CCAATGGAACAGTGATCAATA pLKO.1 427 3UTR 100% 13.200 9.240 N Chfr n/a
5 TRCN0000007705 GCATACCTCTATGAATCTTTA pLKO.1 540 3UTR 100% 13.200 9.240 N CHFR n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001784680.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.