Transcript: Mouse XR_001785107.1

PREDICTED: Mus musculus contactin 3 (Cntn3), transcript variant X7, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cntn3 (18488)
Length:
3690
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001785107.1
NBCI Gene record:
Cntn3 (18488)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001785107.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000113646 CCACCCTTTGTCAGGTTATAT pLKO.1 3561 3UTR 100% 15.000 21.000 N Cntn3 n/a
2 TRCN0000113645 CGGTGACAAATACCAGAGTAT pLKO.1 1155 3UTR 100% 4.950 6.930 N Cntn3 n/a
3 TRCN0000113647 CCCTGTTGATTCAGAGGACAA pLKO.1 664 3UTR 100% 4.050 2.835 N Cntn3 n/a
4 TRCN0000113649 CCTTACAATAACCAACCTCAA pLKO.1 1663 3UTR 100% 4.050 2.835 N Cntn3 n/a
5 TRCN0000113648 CCATTTCTAACATCCACCCTT pLKO.1 3548 3UTR 100% 2.640 1.848 N Cntn3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001785107.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.