Transcript: Human XR_002956747.1

PREDICTED: Homo sapiens centriolin (CNTRL), transcript variant X17, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CNTRL (11064)
Length:
4735
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002956747.1
NBCI Gene record:
CNTRL (11064)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002956747.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413972 GTACTGAATCTCAGCTATAAT pLKO_005 765 3UTR 100% 15.000 21.000 N CNTRL n/a
2 TRCN0000414365 TATCATCGCTCCAAGATATAA pLKO_005 994 3UTR 100% 15.000 21.000 N CNTRL n/a
3 TRCN0000434065 CGTGAACTCAACTTATCATAT pLKO_005 828 3UTR 100% 13.200 18.480 N CNTRL n/a
4 TRCN0000021281 GCCCTGAAGAAGGATTTAGAA pLKO.1 2205 3UTR 100% 5.625 4.500 N CNTRL n/a
5 TRCN0000423547 ATATTACAGAGGCCCTCATTA pLKO_005 625 3UTR 100% 13.200 9.240 N CNTRL n/a
6 TRCN0000423526 CATCAGGAGTGGGTTACATAA pLKO_005 3992 3UTR 100% 13.200 9.240 N CNTRL n/a
7 TRCN0000412900 GCTAAATTTGAGCCACTAAAT pLKO_005 1467 3UTR 100% 13.200 9.240 N CNTRL n/a
8 TRCN0000435260 GGAGAATGAAATTCACTATTT pLKO_005 3116 3UTR 100% 13.200 9.240 N CNTRL n/a
9 TRCN0000420464 TGCAGCACAAACTCGACTATC pLKO_005 1721 3UTR 100% 10.800 7.560 N CNTRL n/a
10 TRCN0000021283 CCTCAATTTGAAAGGCAACAA pLKO.1 971 3UTR 100% 4.950 3.465 N CNTRL n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002956747.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.