Transcript: Human XR_002957145.1

PREDICTED: Homo sapiens doublecortin domain containing 1 (DCDC1), transcript variant X21, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DCDC1 (341019)
Length:
1951
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002957145.1
NBCI Gene record:
DCDC1 (341019)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002957145.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000149496 GCATGAGATTACAGTGGGAAA pLKO.1 1162 3UTR 100% 4.050 5.670 N DCDC1 n/a
2 TRCN0000129935 GTTGATGCTTCCTACTGATAT pLKO.1 1036 3UTR 100% 13.200 9.240 N DCDC1 n/a
3 TRCN0000147677 GTTGCAGAGTTCTCTTCTTTA pLKO.1 674 3UTR 100% 13.200 9.240 N DCDC1 n/a
4 TRCN0000149392 GAACAGTCTTTGCCAGAGTTA pLKO.1 789 3UTR 100% 4.950 3.465 N DCDC1 n/a
5 TRCN0000130384 GCACTATCTCAGTCTTCCTTA pLKO.1 272 3UTR 100% 4.950 3.465 N DCDC1 n/a
6 TRCN0000149727 GTTTATGTCATCCCAGGCAAA pLKO.1 406 3UTR 100% 4.050 2.835 N DCDC1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002957145.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.