Transcript: Human XR_002959596.1

PREDICTED: Homo sapiens FMR1 autosomal homolog 1 (FXR1), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FXR1 (8087)
Length:
3948
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002959596.1
NBCI Gene record:
FXR1 (8087)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002959596.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418419 AGATTGGTTCTAGGTCTTATA pLKO_005 1145 3UTR 100% 13.200 18.480 N FXR1 n/a
2 TRCN0000161009 GAAACGGAATCTGAGCGTAAA pLKO.1 1243 3UTR 100% 10.800 15.120 N FXR1 n/a
3 TRCN0000159365 GCTAAAGTTCGGATGATGAAA pLKO.1 259 3UTR 100% 5.625 7.875 N FXR1 n/a
4 TRCN0000165389 CGTAGACGAAGGACTGATGAA pLKO.1 3437 3UTR 100% 4.950 6.930 N FXR1 n/a
5 TRCN0000160901 GCGAAGTATTCGTACGAAGTT pLKO.1 582 3UTR 100% 4.950 6.930 N FXR1 n/a
6 TRCN0000421765 ACCTCCGGTTATGGTACAAAT pLKO_005 1201 3UTR 100% 13.200 10.560 N FXR1 n/a
7 TRCN0000160812 CGCCAGGTTCCATTTAATGAA pLKO.1 133 3UTR 100% 5.625 4.500 N FXR1 n/a
8 TRCN0000165264 GAGAGGCGTGTGCTAATGAAA pLKO.1 428 3UTR 100% 5.625 4.500 N FXR1 n/a
9 TRCN0000159153 GACGCTACTTACAATGAAATA pLKO.1 313 3UTR 100% 13.200 9.240 N FXR1 n/a
10 TRCN0000158932 GCTAGAGGTTTCTTGGAATTT pLKO.1 838 3UTR 100% 13.200 9.240 N FXR1 n/a
11 TRCN0000164818 CCAGCGAATCTCATCACAGTA pLKO.1 3396 3UTR 100% 4.950 3.465 N FXR1 n/a
12 TRCN0000166775 CCAGAAATGAAGAGGCCACTA pLKO.1 614 3UTR 100% 4.050 2.835 N FXR1 n/a
13 TRCN0000159108 GCACTAAAGAAAGCATTGGAA pLKO.1 1031 3UTR 100% 3.000 2.100 N FXR1 n/a
14 TRCN0000429352 GTATCATATTGCCTATCTAAA pLKO_005 1071 3UTR 100% 13.200 7.920 N FXR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002959596.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.