Transcript: Mouse XR_003950057.1

PREDICTED: Mus musculus echinoderm microtubule associated protein like 5 (Eml5), transcript variant X11, misc_RNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Eml5 (319670)
Length:
11737
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_003950057.1
NBCI Gene record:
Eml5 (319670)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_003950057.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000251135 GGTTATGACTGTCGAAGTAAT pLKO_005 2542 3UTR 100% 13.200 18.480 N Eml5 n/a
2 TRCN0000413817 GGTTATGACTGTCGAAGTAAT pLKO_005 2542 3UTR 100% 13.200 18.480 N EML5 n/a
3 TRCN0000251137 CATTAGGGCATGGTCATATTT pLKO_005 3377 3UTR 100% 15.000 12.000 N Eml5 n/a
4 TRCN0000251136 CCTCAAGACCTATGCTATAAA pLKO_005 3288 3UTR 100% 15.000 10.500 N Eml5 n/a
5 TRCN0000251138 GCAGTACATGGCTACTATATT pLKO_005 11079 3UTR 100% 15.000 10.500 N Eml5 n/a
6 TRCN0000251139 TGGAGTTGCTCAGCGTTATAA pLKO_005 1788 3UTR 100% 15.000 10.500 N Eml5 n/a
7 TRCN0000177680 CCATCTGTAATGGGATCTGAT pLKO.1 6539 3UTR 100% 4.950 2.475 Y Etfrf1 n/a
8 TRCN0000182716 CCTGAGTTCAATTCCCAGCAA pLKO.1 6500 3UTR 100% 2.640 1.320 Y BC028528 n/a
9 TRCN0000412598 ATGATTATCAGTGGGTTATTT pLKO_005 2201 3UTR 100% 15.000 10.500 N EML5 n/a
10 TRCN0000201143 CCAAAGGTCCTGAGTTCAAAT pLKO.1 6492 3UTR 100% 13.200 6.600 Y Ptcra n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 8392 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_003950057.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.