Transcript: Human XR_244289.2

PREDICTED: Homo sapiens intersectin 1 (ITSN1), transcript variant X17, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ITSN1 (6453)
Length:
5284
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_244289.2
NBCI Gene record:
ITSN1 (6453)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_244289.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233548 GATACTCAATGACCAATTAAA pLKO_005 1931 3UTR 100% 15.000 21.000 N ITSN1 n/a
2 TRCN0000002009 GCACTAGCTGACATGAATAAT pLKO.1 480 3UTR 100% 15.000 21.000 N ITSN1 n/a
3 TRCN0000379492 GATCAGCAGTTCCATAGTTTA pLKO_005 369 3UTR 100% 13.200 18.480 N ITSN1 n/a
4 TRCN0000002008 GCACGAATGAGAAACCAGAAA pLKO.1 2857 3UTR 100% 4.950 3.960 N ITSN1 n/a
5 TRCN0000379689 ACTGAAATACAGGCAATTATT pLKO_005 959 3UTR 100% 15.000 10.500 N ITSN1 n/a
6 TRCN0000381219 TACAAGCTCAAGCCCTATATC pLKO_005 3025 3UTR 100% 13.200 9.240 N ITSN1 n/a
7 TRCN0000233547 TCGAAGGCAAGAACTACTAAA pLKO_005 1649 3UTR 100% 13.200 9.240 N ITSN1 n/a
8 TRCN0000233546 TCGATCTGGCAGTGGTATATC pLKO_005 1226 3UTR 100% 13.200 9.240 N ITSN1 n/a
9 TRCN0000002007 CGAGCATCAGAGACCAAGAAA pLKO.1 2297 3UTR 100% 5.625 3.938 N ITSN1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_244289.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.