Transcript: Mouse XR_374518.2

PREDICTED: Mus musculus ubiquitin protein ligase E3 component n-recognin 3 (Ubr3), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ubr3 (68795)
Length:
4609
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_374518.2
NBCI Gene record:
Ubr3 (68795)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_374518.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000367315 TTCATTACTGCAGCGTTATTT pLKO_005 3891 3UTR 100% 15.000 21.000 N Ubr3 n/a
2 TRCN0000367245 TACTTAAGAGAAGGCTATAAT pLKO_005 658 3UTR 100% 15.000 10.500 N Ubr3 n/a
3 TRCN0000413730 TACTTAAGAGAAGGCTATAAT pLKO_005 658 3UTR 100% 15.000 10.500 N UBR3 n/a
4 TRCN0000367246 CAATCCCTGGCCTCCGTATAA pLKO_005 2691 3UTR 100% 13.200 9.240 N Ubr3 n/a
5 TRCN0000367248 GTCACGAGAAGTACCTTATAG pLKO_005 875 3UTR 100% 13.200 9.240 N Ubr3 n/a
6 TRCN0000191533 GCACCAAAGATCAATCCATAA pLKO.1 1097 3UTR 100% 10.800 7.560 N Ubr3 n/a
7 TRCN0000190991 CCAGCAGAACTACAAAGACCT pLKO.1 816 3UTR 100% 2.640 1.848 N Ubr3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_374518.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.