Transcript: Mouse XR_377190.2

PREDICTED: Mus musculus transformation/transcription domain-associated protein (Trrap), transcript variant X21, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Trrap (100683)
Length:
12096
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_377190.2
NBCI Gene record:
Trrap (100683)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_377190.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000362620 CGATGCAGGCCTTGGATATTT pLKO_005 2359 3UTR 100% 15.000 21.000 N Trrap n/a
2 TRCN0000368838 GTAGCCCTGGCCGTGATATTT pLKO_005 3909 3UTR 100% 15.000 21.000 N Trrap n/a
3 TRCN0000088536 CGCTGAACTTTACTCTCTGTT pLKO.1 8834 3UTR 100% 4.950 6.930 N Trrap n/a
4 TRCN0000088390 CTTCACAATCTGATCTCTAAA pLKO.1 10947 3UTR 100% 13.200 10.560 N LOC433959 n/a
5 TRCN0000362621 TATCAAGATCGCTCGCTTTAT pLKO_005 11126 3UTR 100% 13.200 10.560 N Trrap n/a
6 TRCN0000088392 GACGAAGTATTCTCAGCAGAT pLKO.1 1475 3UTR 100% 4.050 3.240 N LOC433959 n/a
7 TRCN0000088537 GTGTCAACTCAGTGTCCATTA pLKO.1 6706 3UTR 100% 10.800 7.560 N Trrap n/a
8 TRCN0000088535 CATCAAGATCATAAGCATCAT pLKO.1 5519 3UTR 100% 4.950 3.465 N Trrap n/a
9 TRCN0000088534 CCCAGCGCATTGAACTGCTTT pLKO.1 8595 3UTR 100% 4.950 3.465 N Trrap n/a
10 TRCN0000088388 CCCGGAAACAAGGTCTGGTTA pLKO.1 9733 3UTR 100% 4.950 3.465 N LOC433959 n/a
11 TRCN0000088389 CCTGCATAAGCAGCACATGAA pLKO.1 2960 3UTR 100% 4.950 3.465 N LOC433959 n/a
12 TRCN0000166364 CACACACACACACACACACAA pLKO.1 65 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_377190.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.