Transcript: Mouse XR_379408.1

PREDICTED: Mus musculus cDNA sequence AF529169 (AF529169), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
AF529169 (209743)
Length:
3806
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_379408.1
NBCI Gene record:
AF529169 (209743)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_379408.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000125400 CCAGGCTATGATTCATTACTA pLKO.1 3699 3UTR 100% 5.625 7.875 N AF529169 n/a
2 TRCN0000424824 GTCCTTGGGAAACTCAATAAA pLKO_005 2889 3UTR 100% 15.000 10.500 N AF529169 n/a
3 TRCN0000125403 CGAAGCAGTCAAGAAGTTTAA pLKO.1 2366 3UTR 100% 13.200 9.240 N AF529169 n/a
4 TRCN0000125402 CCAGTTTGGTTGGTACAACTA pLKO.1 1834 3UTR 100% 4.950 3.465 N AF529169 n/a
5 TRCN0000125401 GCCAATAACAAAGATTGGCAT pLKO.1 3285 3UTR 100% 0.264 0.185 N AF529169 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_379408.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.