Transcript: Mouse XR_384570.2

PREDICTED: Mus musculus transport and golgi organization 2 (Tango2), transcript variant X10, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tango2 (27883)
Length:
1723
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_384570.2
NBCI Gene record:
Tango2 (27883)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_384570.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000184283 GCCACCTGTATAACGGCTTTA pLKO.1 604 3UTR 100% 10.800 15.120 N Tango2 n/a
2 TRCN0000184160 CCTGAGCCTATTGTCTTGACA pLKO.1 693 3UTR 100% 3.000 4.200 N Tango2 n/a
3 TRCN0000183029 CCTGTATTTGTTTGTGTTCAT pLKO.1 1480 3UTR 100% 4.950 3.465 N Tango2 n/a
4 TRCN0000195871 CCAATGGAGAACGACAGAGTT pLKO.1 1270 3UTR 100% 4.950 2.970 N Tango2 n/a
5 TRCN0000149426 CTACCTGAAGAAGGTCTCTAT pLKO.1 578 3UTR 100% 4.950 3.465 N TANGO2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_384570.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.