Transcript: Mouse XR_387043.3

PREDICTED: Mus musculus choroidermia (RAB escort protein 1) (Chm), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Chm (12662)
Length:
1808
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_387043.3
NBCI Gene record:
Chm (12662)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_387043.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000088921 CCAGAAATTGTTTACTCCATA pLKO.1 1787 3UTR 100% 4.950 6.930 N Chm n/a
2 TRCN0000303135 CCAGAAATTGTTTACTCCATA pLKO_005 1787 3UTR 100% 4.950 6.930 N Chm n/a
3 TRCN0000065179 CGGTATGGCAACACTCCATTT pLKO.1 1176 3UTR 100% 10.800 8.640 N CHM n/a
4 TRCN0000088919 GCCGAAGATTTAACATTGATT pLKO.1 748 3UTR 100% 5.625 3.938 N Chm n/a
5 TRCN0000315473 GCCGAAGATTTAACATTGATT pLKO_005 748 3UTR 100% 5.625 3.938 N Chm n/a
6 TRCN0000088922 CCACAAGTAAATGATGCTGAA pLKO.1 594 3UTR 100% 4.050 2.835 N Chm n/a
7 TRCN0000303208 CCACAAGTAAATGATGCTGAA pLKO_005 594 3UTR 100% 4.050 2.835 N Chm n/a
8 TRCN0000065182 GATCGTAATAGGGACGGGTTT pLKO.1 83 3UTR 100% 4.050 5.670 N CHM n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_387043.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.