Transcript: Mouse XR_391136.3

PREDICTED: Mus musculus predicted gene 3912 (Gm3912), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm3912 (100042577)
Length:
687
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_391136.3
NBCI Gene record:
Gm3912 (100042577)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_391136.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239398 ATATGAACACTCATGTCTTTA pLKO_005 411 3UTR 100% 13.200 6.600 Y 2810047C21Rik1 n/a
2 TRCN0000239400 ACTGGAGCCTGATGGTGATTG pLKO_005 220 3UTR 100% 10.800 5.400 Y 2810047C21Rik1 n/a
3 TRCN0000239401 TTTCCCAGTATTCAGTGAAAC pLKO_005 271 3UTR 100% 10.800 5.400 Y 2810047C21Rik1 n/a
4 TRCN0000218071 GTTGTTGGATCAAAGTGCATA pLKO_005 522 3UTR 100% 4.950 2.475 Y Gm7696 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_391136.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.