Transcript: Human XR_428971.3

PREDICTED: Homo sapiens centrosomal protein 164 (CEP164), transcript variant X25, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CEP164 (22897)
Length:
7542
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_428971.3
NBCI Gene record:
CEP164 (22897)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_428971.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000149955 GCTCCGAGAAATTCTTGATGA pLKO.1 5073 3UTR 100% 4.950 6.930 N CEP164 n/a
2 TRCN0000449371 CTAAGGCCAGAGAGCAGTATG pLKO_005 4554 3UTR 100% 10.800 8.640 N CEP164 n/a
3 TRCN0000443873 TTACCTCTCTTCTCGTCAACA pLKO_005 6346 3UTR 100% 4.950 3.960 N CEP164 n/a
4 TRCN0000127595 CCAGCCAAGAACTGGAAATTA pLKO.1 3249 3UTR 100% 15.000 10.500 N CEP164 n/a
5 TRCN0000258105 TGGAGAAGTGGCGCAAGTATT pLKO_005 6131 3UTR 100% 13.200 9.240 N Cep164 n/a
6 TRCN0000449839 TGCTCTTCGTGGATCTCAAAG pLKO_005 2581 3UTR 100% 10.800 7.560 N CEP164 n/a
7 TRCN0000147245 GCAGTGAAAGTTCTGAATCTT pLKO.1 5774 3UTR 100% 5.625 3.938 N CEP164 n/a
8 TRCN0000147376 GCATTGTTTCCATCTGTCTTT pLKO.1 7276 3UTR 100% 4.950 3.465 N CEP164 n/a
9 TRCN0000148591 CAGGATTTAGAGTTGGACCTT pLKO.1 4739 3UTR 100% 2.640 1.848 N CEP164 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_428971.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.