Transcript: Mouse XR_866269.2

PREDICTED: Mus musculus early B cell factor 4 (Ebf4), transcript variant X8, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ebf4 (228598)
Length:
3068
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_866269.2
NBCI Gene record:
Ebf4 (228598)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_866269.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417305 CAATCATACCTGACCTAATAG pLKO_005 2672 3UTR 100% 13.200 18.480 N Ebf4 n/a
2 TRCN0000424228 GACCTCTACGTGCGCCTTATT pLKO_005 682 3UTR 100% 13.200 18.480 N Ebf4 n/a
3 TRCN0000081635 CGTCATTATCATCGGAGACAA pLKO.1 1125 3UTR 100% 4.950 6.930 N Ebf4 n/a
4 TRCN0000427292 CGAAGCAGGCTATCATCTATG pLKO_005 713 3UTR 100% 10.800 8.640 N Ebf4 n/a
5 TRCN0000081637 CTGGTGTATAATAATGGACTT pLKO.1 649 3UTR 100% 4.050 3.240 N Ebf4 n/a
6 TRCN0000081636 CCTTCTGATCCAGTCATTATT pLKO.1 838 3UTR 100% 15.000 10.500 N Ebf4 n/a
7 TRCN0000081634 CGCCTTCTGATCCAGTCATTA pLKO.1 836 3UTR 100% 13.200 9.240 N Ebf4 n/a
8 TRCN0000415336 AGGGCTTGGCATACTCCTAAT pLKO_005 2252 3UTR 100% 10.800 7.560 N Ebf4 n/a
9 TRCN0000081633 CCCTCATACTTACCTCTCTTT pLKO.1 2429 3UTR 100% 4.950 3.465 N Ebf4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_866269.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.