Transcript: Mouse XR_871439.3

PREDICTED: Mus musculus prenyl (solanesyl) diphosphate synthase, subunit 2 (Pdss2), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Pdss2 (71365)
Length:
8709
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_871439.3
NBCI Gene record:
Pdss2 (71365)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_871439.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000253053 GAGCGACGAGCTCAGCAATAT pLKO_005 3736 3UTR 100% 13.200 9.240 N Pdss2 n/a
2 TRCN0000253054 CCATGAGTCACAAGATCAATG pLKO_005 4383 3UTR 100% 10.800 7.560 N Pdss2 n/a
3 TRCN0000253052 ACTCAGCACCTGTAGTCTTAC pLKO_005 4461 3UTR 100% 10.800 6.480 N Pdss2 n/a
4 TRCN0000156683 GCTATCCTGAGTGGAGACTTT pLKO.1 4079 3UTR 100% 4.950 3.465 N PDSS2 n/a
5 TRCN0000153929 CCTGTAGTCTTACATCAGGAA pLKO.1 4469 3UTR 100% 2.640 1.848 N PDSS2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_871439.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.