Transcript: Mouse XR_872422.2

PREDICTED: Mus musculus centromere protein O (Cenpo), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cenpo (52504)
Length:
1246
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_872422.2
NBCI Gene record:
Cenpo (52504)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_872422.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000329469 TTGCTGTCGTTCACCTATAAA pLKO_005 964 3UTR 100% 15.000 21.000 N Cenpo n/a
2 TRCN0000191285 CTCAAACGAACATATCGAATA pLKO.1 398 3UTR 100% 10.800 15.120 N Cenpo n/a
3 TRCN0000201318 GCTCAAACGAACATATCGAAT pLKO.1 397 3UTR 100% 4.950 6.930 N Cenpo n/a
4 TRCN0000329402 TAGAGGCTCAAACGAACATAT pLKO_005 392 3UTR 100% 13.200 10.560 N Cenpo n/a
5 TRCN0000329470 ACTGCGGCAACAACGAGATAA pLKO_005 480 3UTR 100% 13.200 9.240 N Cenpo n/a
6 TRCN0000190919 CCTGTTTAGACTCTGGGAATA pLKO.1 843 3UTR 100% 10.800 7.560 N Cenpo n/a
7 TRCN0000329468 CCTGTTTAGACTCTGGGAATA pLKO_005 843 3UTR 100% 10.800 7.560 N Cenpo n/a
8 TRCN0000190217 CCACGAATGTCACTGTGACAA pLKO.1 1055 3UTR 100% 4.950 3.465 N Cenpo n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_872422.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.