Transcript: Mouse XR_873766.1

PREDICTED: Mus musculus ankyrin repeat and death domain containing 1B (Ankdd1b), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ankdd1b (271144)
Length:
1628
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_873766.1
NBCI Gene record:
Ankdd1b (271144)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_873766.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000265165 GATCATGCTCATGCTAGTTAA pLKO_005 666 3UTR 100% 13.200 10.560 N Ankdd1b n/a
2 TRCN0000251288 AGCCGTGCAAGTGCTACTAAC pLKO_005 969 3UTR 100% 10.800 7.560 N Ankdd1b n/a
3 TRCN0000251285 AGTCGTGAACAGCTTACTAAG pLKO_005 1266 3UTR 100% 10.800 7.560 N Ankdd1b n/a
4 TRCN0000251287 TCGTGGATATGCTGATCAAAG pLKO_005 1593 3UTR 100% 10.800 7.560 N Ankdd1b n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_873766.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.