Transcript: Mouse XR_874537.1

PREDICTED: Mus musculus RIKEN cDNA 1700024B05 gene (1700024B05Rik), misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
1700024B05Rik (100503856)
Length:
1580
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_874537.1
NBCI Gene record:
1700024B05Rik (100503856)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_874537.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000347798 TAGTCTTGGGTGTCCATATTT pLKO_005 1190 3UTR 100% 15.000 7.500 Y Gm8267 n/a
2 TRCN0000023061 CCTGAAAGAATGCAATCAATT pLKO.1 653 3UTR 100% 13.200 6.600 Y LOC382881 n/a
3 TRCN0000347871 CCTTTGAAGAGAACTTCTATA pLKO_005 869 3UTR 100% 13.200 6.600 Y Gm8267 n/a
4 TRCN0000192850 GCAAAGACTTTGAGCCAAATT pLKO.1 1150 3UTR 100% 13.200 6.600 Y 1700024B05Rik n/a
5 TRCN0000270589 TTGCAACATCACTAATCATAT pLKO_005 368 3UTR 100% 13.200 6.600 Y Gm7247 n/a
6 TRCN0000201017 CCCAGTAATCATGGCTATCAT pLKO.1 931 3UTR 100% 5.625 2.813 Y Gm5622 n/a
7 TRCN0000181565 GAGACCAGCAAGAACATACAT pLKO.1 773 3UTR 100% 5.625 2.813 Y Gm9732 n/a
8 TRCN0000192160 CACAACATGAGAAGACAATGT pLKO.1 532 3UTR 100% 4.950 2.475 Y Gm3696 n/a
9 TRCN0000192347 CCATTGACAAGTACAAGGAAT pLKO.1 589 3UTR 100% 4.950 2.475 Y 1700024B05Rik n/a
10 TRCN0000198694 CCTCCTGAAAGAATGCAATCA pLKO.1 650 3UTR 100% 4.950 2.475 Y Gm9732 n/a
11 TRCN0000176783 CGAAGCAAATATTTCATCTCA pLKO.1 908 3UTR 100% 3.000 1.500 Y 4930503E14Rik n/a
12 TRCN0000191111 GAATGCAATCAATTGAAGGAA pLKO.1 660 3UTR 100% 3.000 1.500 Y 1700024B05Rik n/a
13 TRCN0000201366 GCAGTCAATAAGTGATTCCAT pLKO.1 572 3UTR 100% 3.000 1.500 Y 1700024B05Rik n/a
14 TRCN0000192311 CAGCAAGAACATACATCCCAA pLKO.1 778 3UTR 100% 2.640 1.320 Y Gm5622 n/a
15 TRCN0000201292 GAACATACATCCCAAGTGCAA pLKO.1 784 3UTR 100% 2.640 1.320 Y Gm5622 n/a
16 TRCN0000182095 GAGAACAGAAAGCTGCTGGTA pLKO.1 702 3UTR 100% 2.640 1.320 Y Gm9732 n/a
17 TRCN0000200690 GCAACATCACTAATCATATGA pLKO.1 370 3UTR 100% 0.000 0.000 Y 1700024B05Rik n/a
18 TRCN0000177404 GCAAGAACATACATCCCAAAT pLKO.1 780 3UTR 100% 10.800 5.400 Y Gm9732 n/a
19 TRCN0000177036 GAAGACAATGTTGGATATGAA pLKO.1 542 3UTR 100% 5.625 2.813 Y Gm10128 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_874537.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.